Family Assignments

Domains Proteins SCOP Link Families
17 17 SCOP 52686 ABC transporter ATPase domain-like
13 12 SCOP 52592 G proteins
13 8 SCOP 81268 Tandem AAA-ATPase domain
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
8 7 SCOP 81269 Extended AAA-ATPase domain
5 5 SCOP 51751 Tyrosine-dependent oxidoreductases
5 5 SCOP 52652 Nitrogenase iron protein-like
5 5 SCOP 52670 RecA protein-like (ATPase-domain)
5 5 SCOP 53851 Phosphate binding protein-like
5 5 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
4 4 SCOP 50448 Elongation factors
4 2 SCOP 53068 Actin/HSP70
4 4 SCOP 53272 Phosphoribosyltransferases (PRTases)
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51431 Aldo-keto reductases (NADP)
3 3 SCOP 51570 Class I aldolase
3 3 SCOP 52173 CheY-related
3 3 SCOP 52318 Class I glutamine amidotransferases (GAT)
3 3 SCOP 55209 Enolpyruvate transferase, EPT
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
3 3 SCOP 64519 Phase 1 flagellin
3 3 SCOP 75459 Pseudouridine synthase RsuA/RluD
3 3 SCOP 142721 PyrH-like
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 SCOP 50495 Prokaryotic proteases
2 2 SCOP 51262 Glucose permease-like
2 2 SCOP 51521 Family 1 of glycosyl hydrolase
2 2 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2 2 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
2 2 SCOP 52541 Nucleotide and nucleoside kinases
2 1 SCOP 53080 Acetokinase-like
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 53204 Bacterial dinuclear zinc exopeptidases
2 2 SCOP 53384 AAT-like
2 2 SCOP 53402 Cystathionine synthase-like
2 2 SCOP 53614 Ribokinase-like
2 2 SCOP 53785 Phosphofructokinase
2 2 SCOP 53823 L-arabinose binding protein-like
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55348 GAPDH-like
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 55884 Histidine kinase
2 2 SCOP 55921 Creatinase/aminopeptidase
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
2 2 SCOP 69892 Iron-containing alcohol dehydrogenase
2 2 SCOP 75621 Release factor
2 2 SCOP 81656 Meta-cation ATPase, catalytic domain P
2 2 SCOP 81664 Calcium ATPase, transmembrane domain M
2 2 SCOP 89559 NodB-like polysaccharide deacetylase
2 2 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 90124 ABC transporter transmembrane region
2 2 SCOP 102517 N-acetylmuramoyl-L-alanine amidase-like
2 2 SCOP 102945 RelA/SpoT domain
2 2 SCOP 118216 Proton glutamate symport protein
2 2 SCOP 159720 mannose-1-phosphate guanylyl transferase
2 2 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 46463 Globins
1 1 SCOP 46566 Chaperone J-domain
1 1 SCOP 46903 Spo0A
1 1 SCOP 46907 Ribosomal protein L11, C-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47241 Ferritin
1 1 SCOP 47730 Prokaryotic DNA-bending protein
1 1 SCOP 47790 C-terminal domain of RNA polymerase alpha subunit
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48030 FliG
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48197 Glycerol-3-phosphate dehydrogenase
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48558 L-aspartase/fumarase
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49803 beta-Galactosidase/glucuronidase, N-terminal domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50342 CheW-like
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50482 NADH:FMN oxidoreductase-like
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51247 BC C-terminal domain-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51396 FMN-linked oxidoreductases
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51420 Alanine racemase-like, N-terminal domain
1 1 SCOP 51487 beta-glycanases
1 1 SCOP 51553 NagZ-like
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 52010 Pyruvate phosphate dikinase, central domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52403 N-type ATP pyrophosphatases
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52441 BC N-terminal domain-like
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52513 NagB-like
1 1 SCOP 52729 PTS IIb component
1 1 SCOP 52739 Methylesterase CheB, C-terminal domain
1 1 SCOP 52769 Arginase-like amidino hydrolases
1 1 SCOP 52901 Glutathione peroxidase-like
1 1 SCOP 52931 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53245 MurCDEF C-terminal domain
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53324 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 SCOP 53329 Formyltransferase
1 1 SCOP 53417 GABA-aminotransferase-like
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53721 ALDH-like
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53763 UDP-N-acetylglucosamine 2-epimerase
1 1 SCOP 53902 Thiolase-related
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 53921 Fe-only hydrogenase
1 1 SCOP 53928 Cytidine deaminase
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54312 2Fe-2S ferredoxin domains from multidomain proteins
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54714 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54844 Ribosomal protein L22
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55201 Translation initiation factor IF3, C-terminal domain
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55308 Tubulin, C-terminal domain
1 1 SCOP 55327 PurM N-terminal domain-like
1 1 SCOP 55368 Dihydrodipicolinate reductase-like
1 1 SCOP 55376 Glucose 6-phosphate dehydrogenase-like
1 1 SCOP 55805 IIA domain of mannitol-specific and ntr phosphotransferase EII
1 1 SCOP 55822 YrdC-like
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55932 Glutamine synthetase catalytic domain
1 1 SCOP 55935 Guanido kinase catalytic domain
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56043 PurM C-terminal domain-like
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56067 BC ATP-binding domain-like
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56184 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
1 1 SCOP 56195 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 SCOP 56248 Penicillin V acylase
1 1 SCOP 56261 (Glycosyl)asparaginase
1 1 SCOP 56291 ROO N-terminal domain-like
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56554 Insert subdomain of RNA polymerase alpha subunit
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 63412 MPP-like
1 1 SCOP 63588 Glycosyltransferase family 36 C-terminal domain
1 1 SCOP 63733 Glycosyltransferase family 36 N-terminal domain
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64095 Germination protease
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64186 HPr kinase HprK C-terminal domain
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64398 Hsp33 domain
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69390 Cytosine deaminase catalytic domain
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69706 Transcription factor NusA, N-terminal domain
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74756 3-Methyladenine DNA glycosylase I (Tag)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 75264 Glucose-inhibited division protein B (GidB)
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75554 Smc hinge domain
1 1 SCOP 81605 PP2C-like
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82075 Kid/PemK
1 1 SCOP 82261 N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82388 Predicted hydrolases Cof
1 1 SCOP 82550 DegV-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82680 N-utilization substance G protein NusG, N-terminal domain
1 1 SCOP 88682 Alanine racemase
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88746 PFOR Pyr module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88786 C5 cytosine-specific DNA methylase, DCM
1 1 SCOP 88854 Protein kinases, catalytic subunit
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89489 Isoaspartyl dipeptidase, catalytic domain
1 1 SCOP 89494 HMGL-like
1 1 SCOP 89551 PHP domain
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 90050 AglA-like glucosidase
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101340 HD domain
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101802 Surface presentation of antigens (SPOA)
1 1 SCOP 101822 Aminopeptidase/glucanase lid domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102199 Putative cyclase
1 1 SCOP 102485 Putative Holliday junction resolvase RuvX
1 1 SCOP 102547 RbsD-like
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 103040 CheC-like
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 109725 Conserved carboxylase domain
1 1 SCOP 109756 PhoU-like
1 1 SCOP 110354 Outer surface protein, N-terminal domain
1 1 SCOP 110396 CutC-like
1 1 SCOP 110636 ROK
1 1 SCOP 110902 FabZ-like
1 1 SCOP 111222 Bacterial S-adenosylmethionine decarboxylase
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 117362 NanE-like
1 1 SCOP 117372 YicI catalytic domain-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141092 Ribosomal protein L21p
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141755 PdxS-like
1 1 SCOP 142339 CofD-like
1 1 SCOP 142647 TrmB-like
1 1 SCOP 142735 DeoB catalytic domain-like
1 1 SCOP 142789 TM0189-like
1 1 SCOP 143598 YojJ-like
1 1 SCOP 143857 DeoB insert domain-like
1 1 SCOP 143927 beta-CASP RNA-metabolising hydrolases
1 1 SCOP 143979 Type I restriction modification DNA specificity domain
1 1 SCOP 158561 BH3980-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158737 CPF0428-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159185 XkdM-like
1 1 SCOP 159436 HI0933 N-terminal domain-like
1 1 SCOP 159584 PTS system, Fructose specific IIB subunit-like
1 1 SCOP 160538 SpoVG-like

The following families have one or more weak hits: