Family Assignments

Domains Proteins SCOP Link Families
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 52686 ABC transporter ATPase domain-like
10 6 SCOP 81268 Tandem AAA-ATPase domain
10 9 SCOP 81269 Extended AAA-ATPase domain
9 9 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 7 SCOP 52592 G proteins
7 7 SCOP 53851 Phosphate binding protein-like
6 3 SCOP 53068 Actin/HSP70
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 52652 Nitrogenase iron protein-like
3 3 SCOP 52670 RecA protein-like (ATPase-domain)
3 3 SCOP 53168 Purine and uridine phosphorylases
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
2 2 SCOP 48030 FliG
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 50448 Elongation factors
2 2 SCOP 51088 Outer surface protein
2 2 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2 2 SCOP 52097 Clp protease, ClpP subunit
2 2 SCOP 52318 Class I glutamine amidotransferases (GAT)
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 52739 Methylesterase CheB, C-terminal domain
2 1 SCOP 53080 Acetokinase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53785 Phosphofructokinase
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 55884 Histidine kinase
2 2 SCOP 56720 Type II DNA topoisomerase
2 2 SCOP 56802 Acetyl-CoA synthetase-like
2 2 SCOP 75621 Release factor
2 2 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 46566 Chaperone J-domain
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48180 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50490 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51262 Glucose permease-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51396 FMN-linked oxidoreductases
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51431 Aldo-keto reductases (NADP)
1 1 SCOP 51446 Amylase, catalytic domain
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51751 Tyrosine-dependent oxidoreductases
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52339 Methylglyoxal synthase, MgsA
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52513 NagB-like
1 1 SCOP 52584 Phosphoribulokinase/pantothenate kinase
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53204 Bacterial dinuclear zinc exopeptidases
1 1 SCOP 53255 Cofactor-dependent phosphoglycerate mutase
1 1 SCOP 53329 Formyltransferase
1 1 SCOP 53402 Cystathionine synthase-like
1 1 SCOP 53417 GABA-aminotransferase-like
1 1 SCOP 53614 Ribokinase-like
1 1 SCOP 53672 Aspartate/ornithine carbamoyltransferase
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53902 Thiolase-related
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54632 CBS-domain pair
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55209 Enolpyruvate transferase, EPT
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55308 Tubulin, C-terminal domain
1 1 SCOP 55348 GAPDH-like
1 1 SCOP 55376 Glucose 6-phosphate dehydrogenase-like
1 1 SCOP 55822 YrdC-like
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55921 Creatinase/aminopeptidase
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56220 DNase I-like
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56543 Substrate-binding domain of HMG-CoA reductase
1 1 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56895 Aquaporin-like
1 1 SCOP 63412 MPP-like
1 1 SCOP 63516 Outer surface protein C (OspC)
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64519 Phase 1 flagellin
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69797 Thymidylate synthase-complementing protein Thy1
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74759 C-terminal domain of class I lysyl-tRNA synthetase
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 75626 YebC-like
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82261 N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82661 Poly A polymerase head domain-like
1 1 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 100948 Isochorismatase-like hydrolases
1 1 SCOP 101340 HD domain
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101802 Surface presentation of antigens (SPOA)
1 1 SCOP 101822 Aminopeptidase/glucanase lid domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103232 Arginine deiminase
1 1 SCOP 109756 PhoU-like
1 1 SCOP 110354 Outer surface protein, N-terminal domain
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111338 QueA-like
1 1 SCOP 117144 Flagellar hook protein flgE
1 1 SCOP 117362 NanE-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 118216 Proton glutamate symport protein
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 143598 YojJ-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 144053 Thermophilic metalloprotease (M29)
1 1 SCOP 159584 PTS system, Fructose specific IIB subunit-like
1 1 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 161094 MgtE membrane domain-like

The following families have one or more weak hits: