Family Assignments

Domains Proteins SCOP Link Families
23 22 SCOP 52686 ABC transporter ATPase domain-like
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
9 5 SCOP 52211 Succinyl-CoA synthetase domains
9 9 SCOP 52652 Nitrogenase iron protein-like
9 9 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 5 SCOP 81269 Extended AAA-ATPase domain
6 6 SCOP 51900 CoA-binding domain
6 6 SCOP 52592 G proteins
6 6 SCOP 53417 GABA-aminotransferase-like
5 5 SCOP 51751 Tyrosine-dependent oxidoreductases
5 5 SCOP 52670 RecA protein-like (ATPase-domain)
5 5 SCOP 102575 NOL1/NOP2/sun
5 5 SCOP 111284 Putative modulator of DNA gyrase, PmbA/TldD
4 2 SCOP 47965 Transcription factor IIB (TFIIB), core domain
4 4 SCOP 50282 Cold shock DNA-binding domain-like
4 4 SCOP 53384 AAT-like
4 4 SCOP 53402 Cystathionine synthase-like
4 4 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 SCOP 56043 PurM C-terminal domain-like
4 4 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
3 3 SCOP 47241 Ferritin
3 3 SCOP 48311 Aldehyde ferredoxin oxidoreductase, C-terminal domains
3 3 SCOP 50448 Elongation factors
3 3 SCOP 51446 Amylase, catalytic domain
3 3 SCOP 52318 Class I glutamine amidotransferases (GAT)
3 3 SCOP 52403 N-type ATP pyrophosphatases
3 3 SCOP 53204 Bacterial dinuclear zinc exopeptidases
3 3 SCOP 53272 Phosphoribosyltransferases (PRTases)
3 2 SCOP 54632 CBS-domain pair
3 3 SCOP 55327 PurM N-terminal domain-like
3 3 SCOP 55921 Creatinase/aminopeptidase
3 3 SCOP 56229 Aldehyde ferredoxin oxidoreductase, N-terminal domain
3 3 SCOP 56236 Class II glutamine amidotransferases
3 3 SCOP 56251 Proteasome subunits
3 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
3 3 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
3 3 SCOP 81656 Meta-cation ATPase, catalytic domain P
3 3 SCOP 101340 HD domain
3 3 SCOP 110513 IF2B-like
3 3 SCOP 144028 Nqo4-like
3 3 SCOP 160804 PurP ATP-binding domain-like
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 SCOP 51396 FMN-linked oxidoreductases
2 2 SCOP 51691 NadC C-terminal domain-like
2 2 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2 2 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
2 2 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
2 2 SCOP 52173 CheY-related
2 2 SCOP 52491 Tubulin, GTPase domain
2 2 SCOP 52744 Subtilases
2 1 SCOP 52849 PDI-like
2 2 SCOP 52901 Glutathione peroxidase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 1 SCOP 53682 Aspartate/glutamate racemase
2 2 SCOP 53707 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 SCOP 53775 Glutaminase/Asparaginase
2 2 SCOP 53851 Phosphate binding protein-like
2 2 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 55308 Tubulin, C-terminal domain
2 2 SCOP 55316 L30e/L7ae ribosomal proteins
2 2 SCOP 55730 N-acetyl transferase, NAT
2 1 SCOP 55946 TATA-box binding protein (TBP), C-terminal domain
2 1 SCOP 55983 DNA polymerase processivity factor
2 2 SCOP 56067 BC ATP-binding domain-like
2 2 SCOP 56105 SAICAR synthase
2 1 SCOP 56673 DNA polymerase I
2 2 SCOP 63868 MoeA C-terminal domain-like
2 2 SCOP 63883 MoeA N-terminal region -like
2 2 SCOP 64103 MoeA central domain-like
2 2 SCOP 64147 ADP-specific Phosphofructokinase/Glucokinase
2 2 SCOP 64490 RNA-polymerase beta-prime
2 1 SCOP 69496 Helicase-like "domain" of reverse gyrase
2 2 SCOP 69733 Lrp/AsnC-like transcriptional regulator C-terminal domain
2 2 SCOP 81268 Tandem AAA-ATPase domain
2 2 SCOP 82388 Predicted hydrolases Cof
2 2 SCOP 88698 PUA domain
2 1 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 101822 Aminopeptidase/glucanase lid domain
2 2 SCOP 111039 YjbQ-like
2 2 SCOP 117351 ProFAR isomerase associated domain
2 2 SCOP 117688 CAC2371-like
2 2 SCOP 141942 Thi4-like
2 2 SCOP 142622 Met-10+ protein-like
2 2 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 2 SCOP 143423 Transposase IS200-like
2 2 SCOP 159526 PurP N-terminal domain-like
2 2 SCOP 161099 MetI-like
1 1 SCOP 46768 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 SCOP 46887 Methionine aminopeptidase, insert domain
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47808 5' to 3' exonuclease, C-terminal subdomain
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48020 DNA polymerase III clamp loader subunits, C-terminal domain
1 1 SCOP 48141 Ribosomal protein L19 (L19e)
1 1 SCOP 48558 L-aspartase/fumarase
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48596 Group II chaperonin (CCT, TRIC), ATPase domain
1 1 SCOP 49368 Superoxide reductase-like
1 1 SCOP 50110 eIF5a N-terminal domain-like
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50183 Sm motif of small nuclear ribonucleoproteins, SNRNP
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50277 Myf domain
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50342 CheW-like
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50678 ValRS/IleRS/LeuRS editing domain
1 1 SCOP 51012 alpha-Amylases, C-terminal beta-sheet domain
1 1 SCOP 51174 gamma-carbonic anhydrase-like
1 1 SCOP 51183 dTDP-sugar isomerase
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51431 Aldo-keto reductases (NADP)
1 1 SCOP 51570 Class I aldolase
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51650 RuBisCo, large subunit, C-terminal domain
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52034 Group II chaperonin (CCT, TRIC), apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52147 Mug-like
1 1 SCOP 52157 Initiation factor IF2/eIF5b, domain 3
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52219 Flavodoxin-related
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52441 BC N-terminal domain-like
1 1 SCOP 52468 Deoxyhypusine synthase, DHS
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52541 Nucleotide and nucleoside kinases
1 1 SCOP 52739 Methylesterase CheB, C-terminal domain
1 1 SCOP 52769 Arginase-like amidino hydrolases
1 1 SCOP 52773 Histone deacetylase, HDAC
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52976 Maf-like
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53093 Creatinase/prolidase N-terminal domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53118 DnaQ-like 3'-5' exonuclease
1 1 SCOP 53138 Ribosomal protein L18 and S11
1 1 SCOP 53183 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53342 Fibrillarin homologue
1 1 SCOP 53345 Hypothetical protein MJ0882
1 1 SCOP 53354 Protein-L-isoaspartyl O-methyltransferase
1 1 SCOP 53496 Prolyl oligopeptidase, C-terminal domain
1 1 SCOP 53620 Thiamin biosynthesis kinases
1 1 SCOP 53634 Carbamate kinase
1 1 SCOP 53640 AraD-like aldolase/epimerase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53763 UDP-N-acetylglucosamine 2-epimerase
1 1 SCOP 53766 Oligosaccharide phosphorylase
1 1 SCOP 53791 Tetrapyrrole methylase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 54193 L15e
1 1 SCOP 54212 Translational machinery components
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54286 MoaD
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54676 NadC N-terminal domain-like
1 1 SCOP 54687 Ribosomal protein L10e
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54844 Ribosomal protein L22
1 1 SCOP 54894 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 54967 Ribulose 1,5-bisphosphate carboxylase-oxygenase
1 1 SCOP 54976 Acylphosphatase-like
1 1 SCOP 55032 Bacterial exopeptidase dimerisation domain
1 1 SCOP 55036 NAD-binding domain of HMG-CoA reductase
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55130 Ribosomal protein L30p/L7e
1 1 SCOP 55206 RNA 3'-terminal phosphate cyclase, RPTC
1 1 SCOP 55262 GAD domain
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55348 GAPDH-like
1 1 SCOP 55368 Dihydrodipicolinate reductase-like
1 1 SCOP 55482 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 SCOP 55505 Neurolysin-like
1 1 SCOP 55667 Ribonuclease PH domain 2-like
1 1 SCOP 55707 Biotin holoenzyme synthetase
1 1 SCOP 55822 YrdC-like
1 1 SCOP 55884 Histidine kinase
1 1 SCOP 55910 Ribosome anti-association factor eIF6 (aIF6)
1 1 SCOP 55932 Glutamine synthetase catalytic domain
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56261 (Glycosyl)asparaginase
1 1 SCOP 56267 DmpA-like
1 1 SCOP 56291 ROO N-terminal domain-like
1 1 SCOP 56350 Lambda integrase-like, catalytic core
1 1 SCOP 56530 FAH
1 1 SCOP 56543 Substrate-binding domain of HMG-CoA reductase
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56727 DNA topoisomerase IV, alpha subunit
1 1 SCOP 56748 PriA-like
1 1 SCOP 56785 HAD-related
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56822 Hybrid cluster protein (prismane protein)
1 1 SCOP 63801 ATP sulfurylase N-terminal domain
1 1 SCOP 63979 ATP sulfurylase catalytic domain
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 63993 Dipeptide transport protein
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64077 MTH938-like
1 1 SCOP 64080 Hjc-like
1 1 SCOP 64117 tRNA(1-methyladenosine) methyltransferase-like
1 1 SCOP 64427 DNA double-strand break repair nuclease
1 1 SCOP 64433 Carbamilase
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69820 MTH1598-like
1 1 SCOP 69892 Iron-containing alcohol dehydrogenase
1 1 SCOP 74759 C-terminal domain of class I lysyl-tRNA synthetase
1 1 SCOP 75079 Renal dipeptidase
1 1 SCOP 75176 D-ribose-5-phosphate isomerase (RpiA), catalytic domain
1 1 SCOP 75221 Hypothetical protein MTH1 (MT0001), dimerisation domain
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 75434 Divalent ion tolerance proteins CutA (CutA1)
1 1 SCOP 75446 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 SCOP 75570 Archaeal IMP cyclohydrolase PurO
1 1 SCOP 82258 SAH/MTA deaminase-like
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82545 GckA/TtuD-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82705 DNA-binding protein AlbA
1 1 SCOP 82803 Phosphoesterase-related
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88803 Archaeosine tRNA-guanine transglycosylase, C2 domain
1 1 SCOP 89013 4-alpha-glucanotransferase, domain 2
1 1 SCOP 89032 Cobalamin adenosyltransferase
1 1 SCOP 89125 Nop domain
1 1 SCOP 89286 4-alpha-glucanotransferase, C-terminal domain
1 1 SCOP 89332 DNA replication initiator (cdc21/cdc54) N-terminal domain
1 1 SCOP 89403 Glucose-6-phosphate isomerase, GPI
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89508 Glycerophosphoryl diester phosphodiesterase
1 1 SCOP 89554 4-alpha-glucanotransferase, N-terminal domain
1 1 SCOP 89716 XPF/Rad1/Mus81 nuclease
1 1 SCOP 89724 Macro domain
1 1 SCOP 89751 Ta1320-like
1 1 SCOP 89902 PaaI/YdiI-like
1 1 SCOP 90046 Arginine decarboxylase
1 1 SCOP 100948 Isochorismatase-like hydrolases
1 1 SCOP 100967 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101745 RNase P subunit p29-like
1 1 SCOP 101791 Aminomethyltransferase beta-barrel domain
1 1 SCOP 101995 PA3696/SPS0176-like
1 1 SCOP 102189 AmyC N-terminal domain-like
1 1 SCOP 102317 NagD-like
1 1 SCOP 102406 MoCo carrier protein-like
1 1 SCOP 102463 Peptidyl-tRNA hydrolase II
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102999 Nickel responsive regulator NikR, C-terminal domain
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103040 CheC-like
1 1 SCOP 103051 AlaX-like
1 1 SCOP 103166 Ta1353-like
1 1 SCOP 103366 Hypothetical protein PH1602
1 1 SCOP 103487 V-type ATP synthase subunit C
1 1 SCOP 103492 Preprotein translocase SecY subunit
1 1 SCOP 109756 PhoU-like
1 1 SCOP 110442 RNase P subunit p30
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 110853 Hypothetical protein PF0380
1 1 SCOP 110858 Gamma-glutamyl cyclotransferase-like
1 1 SCOP 111058 Hypothetical protein PF0899
1 1 SCOP 111233 YfcE-like
1 1 SCOP 111250 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111454 RpoE2-like
1 1 SCOP 116727 TrkA C-terminal domain-like
1 1 SCOP 116798 Hypothetical protein PH1932
1 1 SCOP 116976 AgoG-like
1 1 SCOP 117220 Ribosomal protein L35ae
1 1 SCOP 117348 Hypothetical protein TTHA0113
1 1 SCOP 117449 LamB/YcsF-like
1 1 SCOP 117458 FumA C-terminal domain-like
1 1 SCOP 117786 Ribosomal protein S24e
1 1 SCOP 118007 CYTH domain
1 1 SCOP 118162 Tpt1/KptA
1 1 SCOP 118216 Proton glutamate symport protein
1 1 SCOP 140286 PF1790-like
1 1 SCOP 140675 PF0609-like
1 1 SCOP 141131 Acetamidase/Formamidase-like
1 1 SCOP 141301 GatD N-terminal domain-like
1 1 SCOP 141323 NfeD domain-like
1 1 SCOP 141341 Gar1-like SnoRNP
1 1 SCOP 141716 Hypothetical RNA methyltransferase domain (HRMD)
1 1 SCOP 141755 PdxS-like
1 1 SCOP 141796 TM1410-like
1 1 SCOP 141979 AF0055-like
1 1 SCOP 142536 AF0625-like
1 1 SCOP 142635 hypothetical RNA methyltransferase
1 1 SCOP 142721 PyrH-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 142789 TM0189-like
1 1 SCOP 142917 PF0168-like
1 1 SCOP 143094 AF0104-like
1 1 SCOP 143431 TTP0101/SSO1404-like
1 1 SCOP 143438 THUMP domain
1 1 SCOP 143448 AMMECR1-like
1 1 SCOP 143642 LplA-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143871 PF0523-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 143927 beta-CASP RNA-metabolising hydrolases
1 1 SCOP 144211 Nucleolar RNA-binding protein Nop10-like
1 1 SCOP 158332 PF0610-like
1 1 SCOP 158338 Rps19E-like
1 1 SCOP 158569 Cas Cmr5-like
1 1 SCOP 158706 Achaeal helicase C-terminal domain
1 1 SCOP 159128 HupF/HypC-like
1 1 SCOP 159161 AlaX-M N-terminal domain-like
1 1 SCOP 159249 PH0987 C-terminal domain-like
1 1 SCOP 159464 AF0587 domain-like
1 1 SCOP 159513 EMG1/NEP1-like
1 1 SCOP 159518 AF1056-like
1 1 SCOP 159523 AF0751-like
1 1 SCOP 159613 TBP-interacting protein-like
1 1 SCOP 159697 TRM1-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159768 Phosphomethylpyrimidine kinase C-terminal domain-like
1 1 SCOP 159903 PH1570-like
1 1 SCOP 160351 Rpp14/Pop5-like
1 1 SCOP 160364 MTH889-like
1 1 SCOP 160464 PH0730 C-terminal domain-like
1 1 SCOP 160489 SSO1042-like
1 1 SCOP 160528 V-type ATPase subunit E
1 1 SCOP 160611 PH0223-like
1 1 SCOP 160883 CheD-like
1 1 SCOP 160976 AF1531-like
1 1 SCOP 161071 SNF-like

The following families have one or more weak hits: