Family Assignments

Domains Proteins SCOP Link Families
9 9 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
8 8 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 7 SCOP 52592 G proteins
6 5 SCOP 81269 Extended AAA-ATPase domain
4 4 SCOP 50282 Cold shock DNA-binding domain-like
4 4 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
3 3 SCOP 52652 Nitrogenase iron protein-like
3 3 SCOP 52670 RecA protein-like (ATPase-domain)
3 2 SCOP 53068 Actin/HSP70
3 3 SCOP 53118 DnaQ-like 3'-5' exonuclease
3 1 SCOP 55974 S-adenosylmethionine synthetase
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 50448 Elongation factors
2 2 SCOP 50678 ValRS/IleRS/LeuRS editing domain
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52432 ETFP subunits
2 2 SCOP 52686 ABC transporter ATPase domain-like
2 2 SCOP 52778 CAT-like
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53417 GABA-aminotransferase-like
2 2 SCOP 53851 Phosphate binding protein-like
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
2 2 SCOP 75459 Pseudouridine synthase RsuA/RluD
2 2 SCOP 75621 Release factor
2 1 SCOP 81268 Tandem AAA-ATPase domain
2 2 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 89800 Deoxycytidylate deaminase-like
2 2 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
1 1 SCOP 46566 Chaperone J-domain
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 46978 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47241 Ferritin
1 1 SCOP 47253 Ribonucleotide reductase-like
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47790 C-terminal domain of RNA polymerase alpha subunit
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48025 N-terminal domain of DnaB helicase
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48174 Cryptochrome/photolyase FAD-binding domain
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49541 Periplasmic domain of cytochrome c oxidase subunit II
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50263 Single strand DNA-binding domain, SSB
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51247 BC C-terminal domain-like
1 1 SCOP 51605 Enolase
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 51913 FAD-linked reductases, N-terminal domain
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52410 PAPS reductase-like
1 1 SCOP 52441 BC N-terminal domain-like
1 1 SCOP 52471 C-terminal domain of the electron transfer flavoprotein alpha subunit
1 1 SCOP 52901 Glutathione peroxidase-like
1 1 SCOP 52923 Transketolase C-terminal domain-like
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53329 Formyltransferase
1 1 SCOP 53339 RNA methyltransferase FtsJ
1 1 SCOP 53402 Cystathionine synthase-like
1 1 SCOP 53733 Aconitase iron-sulfur domain
1 1 SCOP 53791 Tetrapyrrole methylase
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54293 2Fe-2S ferredoxin-related
1 1 SCOP 54312 2Fe-2S ferredoxin domains from multidomain proteins
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54844 Ribosomal protein L22
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 54981 EF-G/eEF-2 domains III and V
1 1 SCOP 54996 Ribosomal protein S6
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55201 Translation initiation factor IF3, C-terminal domain
1 1 SCOP 55262 GAD domain
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55879 DNA gyrase/MutL, N-terminal domain
1 1 SCOP 55921 Creatinase/aminopeptidase
1 1 SCOP 56025 Nuclease
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56067 BC ATP-binding domain-like
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 56554 Insert subdomain of RNA polymerase alpha subunit
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56802 Acetyl-CoA synthetase-like
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 57752 Ribosomal protein S14
1 1 SCOP 57939 DnaJ/Hsp40 cysteine-rich domain
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75626 YebC-like
1 1 SCOP 81335 F1F0 ATP synthase subunit A
1 1 SCOP 81441 Cytochrome c oxidase subunit I-like
1 1 SCOP 81451 Cytochrome c oxidase subunit III-like
1 1 SCOP 81463 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82359 PP-loop ATPase
1 1 SCOP 82526 Monomeric isocitrate dehydrogenase
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82680 N-utilization substance G protein NusG, N-terminal domain
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89361 HesB-like domain
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89743 N5-glutamine methyltransferase, HemK
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 110943 HSP90 C-terminal domain
1 1 SCOP 111284 Putative modulator of DNA gyrase, PmbA/TldD
1 1 SCOP 117458 FumA C-terminal domain-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 142020 Nqo1 FMN-binding domain-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 142701 RibD C-terminal domain-like
1 1 SCOP 142721 PyrH-like
1 1 SCOP 142988 Electron transfer flavoprotein-ubiquinone oxidoreductase-like
1 1 SCOP 143244 Nqo5-like
1 1 SCOP 143256 ETF-QO domain-like
1 1 SCOP 143457 VC0467-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144031 Nq06-like

The following families have one or more weak hits: